PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G005300.2
Common NameB456_011G005300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LSD
Protein Properties Length: 171aa    MW: 17807.7 Da    PI: 8.3889
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G005300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.31.1e-12731125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        C+gCr  L YPrGA++V+CalC+tV
  Gorai.011G005300.2  7 CSGCRSNLLYPRGATNVCCALCNTV 31
                        ************************9 PP

2zf-LSD1391.3e-124669124
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                        CggCrtlL+Y rG +sVRC++C+t
  Gorai.011G005300.2 46 CGGCRTLLMYARGGTSVRCSCCHT 69
                        ***********************8 PP

3zf-LSD1499.6e-1684108125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         Cg+Crt+L+YP+GApsV+Ca+C+ V
  Gorai.011G005300.2  84 CGHCRTTLMYPYGAPSVKCAICQYV 108
                         ***********************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010539.1E-13434IPR005735Zinc finger, LSD1-type
PfamPF069432.0E-10731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.7E-154372IPR005735Zinc finger, LSD1-type
PfamPF069432.4E-104669IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.8E-1381111IPR005735Zinc finger, LSD1-type
PfamPF069432.4E-1484108IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MQSQIVCSGC RSNLLYPRGA TNVCCALCNT VTQVPLPGMD MGQLICGGCR TLLMYARGGT  60
SVRCSCCHTL NLAPAPNQIA HINCGHCRTT LMYPYGAPSV KCAICQYVTN VGTGNARAPF  120
CVSRPNQIAS AGTVPSTSTS QTVVVENPMS VDESGKLVSN VVVGITTDKK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454255.11e-121PREDICTED: protein LSD1-like
RefseqXP_012454254.11e-121PREDICTED: protein LSD1-like
SwissprotP940772e-71LSD1_ARATH; Protein LSD1
TrEMBLA0A0D2VGH51e-121A0A0D2VGH5_G
STRINGGLYMA05G30490.17e-90(Glycine max)
STRINGGLYMA08G13630.15e-90(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.71e-69LSD family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]